Description
biojava - Java framework for processing biological data
| Property | Value |
|---|---|
| Distribution | RPM Universal |
| Repository | JPackage 6.0 all |
| Package name | biojava |
| Package version | 1.7.1 |
| Package release | 1.jpp6 |
| Package architecture | noarch |
| Package type | rpm |
| Installed size | 3.45 MB |
| Download size | 3.10 MB |
| Official Mirror | mirrors.dotsrc.org |
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
Alternatives
| Package | Version | Architecture | Repository |
|---|---|---|---|
| biojava | - | - | - |
Requires
| Name | Value |
|---|---|
| bytecode | - |
| commons-cli | - |
| commons-collections | - |
| commons-dbcp | - |
| commons-pool | - |
| hsqldb | - |
| jgrapht | - |
| jpackage-utils | - |
Provides
| Name | Value |
|---|---|
| biojava | = 1.7.1-1.jpp6 |
Download
| Type | URL |
|---|---|
| Binary Package | biojava-1.7.1-1.jpp6.noarch.rpm |
| Source Package | biojava-1.7.1-1.jpp6.src.rpm |
Install Howto
Fedora, CentOS, RHEL:
- Download the latest jpackage-release rpm from
http://mirrors.dotsrc.org/jpackage/6.0/generic/free/RPMS/ - Install jpackage-release rpm:
# rpm -Uvh jpackage-release*rpm - Install biojava rpm package:
# yum install biojava
- Add the JPackage 6.0 repository:
# zypper addrepo http://mirrors.dotsrc.org/jpackage/6.0/generic/free/ jpackage-6.0 - Install biojava rpm package:
# zypper install biojava
- Add the JPackage 6.0 repository:
# urpmi.addmedia jpackage-6.0 http://mirrors.dotsrc.org/jpackage/6.0/generic/free/ with hdlist.cz - Update packages list:
# urpmi.update -a - Install biojava rpm package:
# urpmi biojava
Files
| Path |
|---|
| /usr/share/java/biojava-1.7.1.jar |
| /usr/share/java/biojava.jar |
Changelog
2010-12-08 - David Walluck <dwalluck@redhat.com> 0:1.7.1-1 - 1.7.1
2009-09-21 - David Walluck <dwalluck@redhat.com> 0:1.7-1 - release
See Also
| Package | Description |
|---|---|
| biojava-apps-1.7.1-1.jpp6.noarch.rpm | Apps for biojava |
| biojava-apps-javadoc-1.7.1-1.jpp6.noarch.rpm | Javadoc for biojava-apps |
| biojava-demos-1.7.1-1.jpp6.noarch.rpm | Demos for biojava |
| biojava-demos-javadoc-1.7.1-1.jpp6.noarch.rpm | Javadoc for biojava-demos |
| biojava-javadoc-1.7.1-1.jpp6.noarch.rpm | Javadoc for biojava |
| bnd1-1.43.0-1.jpp6.noarch.rpm | BND OSGi bundle tools |
| bndtask-0.2.0-1.jpp6.noarch.rpm | OSGi bundle ant task |
| boilerpipe-1.1.0-1.jpp6.noarch.rpm | Fulltext Extraction from HTML |
| boilerpipe-javadoc-1.1.0-1.jpp6.noarch.rpm | Javadoc for boilerpipe |
| bonecp-0.8.0-1.jpp6.noarch.rpm | BoneCP JDBC pool |
| bonecp-javadoc-0.8.0-1.jpp6.noarch.rpm | Javadoc for bonecp |
| bouncycastle-1.46-4.jpp6.noarch.rpm | Bouncy Castle Crypto Package for Java |
| bouncycastle-javadoc-1.46-4.jpp6.noarch.rpm | Javadoc for bouncycastle |
| brazil-2.3-9.jpp6.noarch.rpm | Extremely small footprint Java HTTP stack |
| brazil-demo-2.3-9.jpp6.noarch.rpm | Demos for brazil |
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